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Comparing Phylogenetic Trees
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Classroom Contents
Tropical Geometry of Phylogenetic Tree Spaces
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- 1 Introduction
- 2 Notation and Terminology
- 3 Where do phylogenetic trees come from?
- 4 Motivation and Overview
- 5 Comparing Phylogenetic Trees
- 6 BHV Space: A Geometric Construction
- 7 The BHV Metric
- 8 Defining Phylogenetic Trees as Metrics
- 9 Tropical Geometry
- 10 An Example: 4 Leaves
- 11 Statistical Issues: Stickiness & High Dimensionality
- 12 The Tropical Metric
- 13 Stability
- 14 What else do we know?
