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SmithWaterman
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- 1 Introduction
- 2 The problem
- 3 Cosmic Ray
- 4 Mutation Testing
- 5 Exceptions
- 6 Embedded if directives
- 7 Embedded if problems
- 8 Externalize
- 9 The Challenge
- 10 Research
- 11 SmithWaterman Alignment
- 12 Computer Science II
- 13 Context
- 14 Anchor
- 15 Contexts
- 16 SmithWaterman
- 17 The Fundamental Algorithm
- 18 Updating an Anchor
- 19 Python Implementation
- 20 Commandline Interface
- 21 Demo
- 22 Work to do
- 23 IDE integration
- 24 Anchoring directories
- 25 How we deal with this
- 26 Alternative tokenization
- 27 Scoring functions
- 28 Python to Rust
- 29 Speed
- 30 Learning Curve
- 31 Positive Experience
- 32 Cake vs Rust
- 33 Quick demo
- 34 Mirror display
- 35 Creating an Anchor
