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Alpha and Beta Diversity
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Classroom Contents
rRNA Sequencing Analysis and Visualization
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- 1 Introduction
- 2 Inputs required
- 3 Analyses Included in this video
- 4 Goals for this video
- 5 Looking at the input files format
- 6 OTU identification and clustering
- 7 Phylotype Analysis
- 8 Alpha and Beta Diversity
- 9 PCA output in R
- 10 AMOVA between treatments
- 11 ggtree for tree plotting in R
- 12 Customization of ggtree
- 13 Galaxy + Krona
- 14 MEGAN6
- 15 Closing summary
