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2019 STAT115 Lect6.4 Burrows-Wheeler Alignment
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STAT115
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- 1 2019 STAT115 Lect2.1 Microarrays
- 2 2019 STAT115 Lect2.2 Quantile Normalization
- 3 2019 STAT115 Lect2.3 RMA
- 4 2019 STAT115 Lect2.4 RMA Demo
- 5 2019 STAT115 Lect4.1 Hierarchical Clustering
- 6 2019 STAT115 Lect4.2 K-means Clustering
- 7 2019 STAT115 Lect4.3 Batch Effect Correction
- 8 2019 STAT115 Lect4.4 Gene Ontology
- 9 2019 STAT115 Lect4.5 Gene Set Enrichment Analyses
- 10 2019 STAT115 Lect5.1 Unsupervised Learning
- 11 2019 STAT115 Lect5.2 Principal Component Analysis
- 12 2019 STAT115 Lect5.3 Logistic Regression
- 13 2019 STAT115 Lect5.4 Supervised Learning
- 14 2019 STAT115 Lect6.1 Sequencing
- 15 2019 STAT115 Lect6.2 FASTQC
- 16 2019 STAT115 Lect6.3 Blast and Suffix Tree / Array
- 17 2019 STAT115 Lect6.4 Burrows-Wheeler Alignment
- 18 2019 STAT115 Lect6.5 SAM, BAM, and BED Files
- 19 2019 STAT115 Lect7.1 Intro to RNA-seq
- 20 2019 STAT115 Lect7.2 RNA-seq QC
- 21 2019 STAT115 Lect7.3 RNA-seq Expression Index
- 22 2019 STAT115 Lect7.4 DESeq2
- 23 2019 STAT115 Lect8.1 Intro to scRNA-seq
- 24 2019 STAT115 Lect8.2 QC and Visualize scRNA-seq
- 25 2019 STAT115 Lect8.3 Cluster and Annotate scRNA-seq
- 26 2019 STAT115 Lect8.4 Differential Expression on scRNA-seq
- 27 2019 STAT115 Lect9.1 scRNA-seq Continued
- 28 2019 STAT115 Lect9.2 Gene Expression Module Summary
- 29 2019 STAT115 Lect9.3 Expression Analyses Case Studies
- 30 2019 STAT115 Lect10.1 Transcription regulation
- 31 2019 STAT115 Lect10.2 Motif Finding Using Expectation Maximization
- 32 2019 STAT115 Lect10.4 Gibbs Sampler Intuitions
- 33 STAT115 Chapter 10.5 Motif Conservation and Modules
- 34 2019 STAT115 Lect11.1 ChIP-seq
- 35 2019 STAT115 Lect11.2 ChIP-seq Peak Calling and QC
- 36 2019 STAT115 Lect11.3 ChIP-seq Motif Finding and Collaborating TFs
- 37 2019 STAT115 Lect11.4 ChIP-seq Target Identification
- 38 2019 STAT115 Lect12.1 Intro to Epigenetics
- 39 2019 STAT115 Lect12.2 DNA Methylation
- 40 2019 STAT115 Lect12.3 Analyses of DNA Methylome
- 41 2019 STAT115 Lect12.4 Nucleosome Positioning
- 42 2019 STAT115 Lect14.1 Chromatin Interaction HiC
- 43 2019 STAT115 Lect14.2 3D Genome Structure
- 44 2019 STAT115 Lect14.3 3D Genome Dynamics
- 45 2019 STAT115 Lect14.4 Gene Regulatory Network
- 46 2019 STAT115 Lect15.1 SNPs, LD and Haplotypes
- 47 2019 STAT115 Lect15.2 Association Studies
- 48 2019 STAT115 Lect15.3 Issues on GWAS Studies
- 49 2019 STAT115 Lect15.4 eQTL Analyses
- 50 2019 STAT115 Lect16.1 EWAS Annotate RSNPs
- 51 2019 STAT115 Lect16.2 Module II Summary
- 52 2019 STAT115 Lect16.3 Gene Regulation Case Studies
- 53 2019 STAT115 Lect17.1 Intro to Hidden Markov Model
- 54 2019 STAT115 Lect17.2 HMM Forward and Backward Procedures
- 55 2019 STAT115 Lect17.3 HMM Viterbi Algorithm
- 56 2019 STAT115 Lect18.1 Overview of Cancer Genetics
- 57 2019 STAT115 Lect18.2 Tumor Mutation Calling
- 58 2019 STAT115 Lect18.3 Annotating Tumor Mutations
- 59 2019 STAT115 Lect18.4 Test Driver Mutations
- 60 2019 STAT115 Lect19.1 Cancer Subtyping
- 61 2019 STAT115 Lect19.1 Cancer Subtyping
- 62 2019 STAT115 Lect19.2 Basic Survival Analysis
- 63 2019 STAT115 Lect19.3 Cancer Mutation Types and Distributions
- 64 2019 STAT115 Lect19.4 Cancer Genomics Resources
- 65 2019 STAT115 Lect20.1 Cancer Targeted Therapy
- 66 2019 STAT115 Lect20.2 Cancer Drug Resistance
- 67 2019 STAT115 Lect20.3 Overcome Drug Resistance
- 68 2019 STAT115 Lect20.4 Synthetic Lethality
- 69 2019 STAT115 Lect21.1 Introduction of Cancer Immunotherapy
- 70 2019 STAT115 Lect21.2 Neoantigen Presentation
- 71 2019 STAT115 Lect21.3 Tumor Immune Infiltration
- 72 2019 STAT115 Lect21.4 Tumor Immune Repertoires
- 73 2019 STAT115 Lect22.1 Tumor Immune Cell Activation
- 74 2019 STAT115 Lect22.3 CRISPR Screens
- 75 2019 STAT115 Lect23.1 CRISPR Screen Analyses
- 76 2019 STAT115 Lect23.2 Cancer Epigenetics and CIMP
- 77 2019 STAT115 Lect23.3 HDAC and 5-AZA in Cancer
- 78 2019 STAT115 Lect23.4 CRISPR Screen and Epigenetic Regulators of Cancer Drug Response
- 79 2019 STAT115 Lect23.5 Personalized Combination Cancer Therapy
- 80 2019 STAT115 Lect24.1 Module III Review
- 81 2019 STAT115 Lect24.2 Course Summary
- 82 2019 STAT115 Lect24.3 Final Review
