Wings, Feathers, Flight - The PhyloG2P Approach to Understanding Bird Biology

Wings, Feathers, Flight - The PhyloG2P Approach to Understanding Bird Biology

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Intro

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1 of 33

Intro

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Wings, Feathers, Flight - The PhyloG2P Approach to Understanding Bird Biology

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  1. 1 Intro
  2. 2 Using phylogenies to connect genotype to phenotype
  3. 3 Matching human regulatory regions to independently lost mammalian traits
  4. 4 Taste receptors in mammals
  5. 5 Birds inherited only the umami (meat) receptor from their dinosaur ancestors
  6. 6 Hummingbirds can taste sugar due to changes in the gene other binds use to taste meat (or insects)
  7. 7 Non-coding 'Dark matter of the genome: a regulatory network?
  8. 8 CNEEs: evolutionarily conserved non-coding enhancer regions
  9. 9 Noncoding enhancers: long-range control of gene expression
  10. 10 Phylogenetic hidden Markov model detects CNEEs using Phastcons
  11. 11 A role for gene regulation in the origin of feathers
  12. 12 Conserved non-exonic elements (CNEES) act as enhancers for feather genes
  13. 13 High origination rates of feather CNEEs, but not feather genes, when feathers evolved
  14. 14 Bird-specific regulatory evolution: what makes a bird a bird?
  15. 15 Bird-specific CNEEs associated with genes for limb and body size evolution
  16. 16 CNEEs and the convergent evolution of flightlessness in Palaeognathae
  17. 17 Skeletal modifications for flightlessness
  18. 18 11 new palaeognath genomes
  19. 19 42-species whole genome alignment for birds using ProgressiveCactus
  20. 20 Relationships of rheas unclear
  21. 21 Coalescent analyses resolve the position of rheas and reveal an ancient rapid radiation
  22. 22 Gene tree distribution suggests a near polytomy at base of ratites
  23. 23 Anomaly zone: most common gene tree does not match the species tree
  24. 24 Evolutionary change: genes or gene regulation? Evolution at Two Levels in Humans and Chimpanzees
  25. 25 A convergently accelerated CNEE detected with a novel Bayesian method
  26. 26 Additional examples of convergently accelerated CNEES
  27. 27 Rapid regulatory evolution near 1000 developmental genes
  28. 28 Genes showing convergent regulatory evolution in 3 lineages of ratites
  29. 29 Assay for Transposase-Accessible Chromatin
  30. 30 Differences in ATAC-se peaks between thea and chicken suggest changes in limb gene regulation
  31. 31 Combined information from multiple sources suggests candidate enhancers for flightlessness phenotypes
  32. 32 Volant version of CNEE drives gene expression in the developing forelimb of chicken but flightless version does not
  33. 33 Measuring gene expression and open chromatin across fore- and hindlimbs of paleognath embryos

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